I remember you wrote in the other thread you will land Narita at 1900, 20th, and you are vegetarian.
Travelling in Japan as vegetarian is not so easy, especially in countryside, since vegetarian restaurants are very rare in Japan: safest bet will be finding Indian restaurants which are very common in cities like not only Tokyo but also Nagano, maybe, however smaller towns tend not to have vegetarian (including Indian) restaurants.
The next point is that late November is the most crowded season in Kyoto (and thus also nearby cities like Osaka). Tokyo is always crowded, especially in Saturdays and the day before holidays.
So, my recommendations are as follows.
Nov. 20th Narita. Your flight might delay, but even in this case, you can get there easily by using the shuttle bus. The hotel price is much cheaper than in central Tokyo. You will be able to have vegetarian meal in Narita AP, though there are not so many vegetarian/vegan friendly places.
https://goo.gl/9HnNV7Nov. 21st Nagano
Buy Japan Rail Pass 7 days for two adults and activate it on 21st Nov. Your child do not need to buy tickets. Stay in nearby Nagano station. Send baggage with Takkyubin to hotel in Nagoya.
http://goo.gl/WmSr38Nov. 22nd Toyama.
If weather permits, take bus to Ogisawa and then do Alpine route. If the weather is not good for the mountain travel, take Shinkansen to Kanazawa and see the city of Kanazawa and then go back to Toyama. Stay at Toyama.
https://goo.gl/zj6gFfNov 23rd. Nagoya
Take train to Takayama. If time permits, round trip bus to Shirakawa-go. Train to Nagoya and stay there. At this time, you will have very scarce chance to get nice rooms in Kyoto in an affordable price. But in Nagoya there are many.
http://goo.gl/KXv73ONov. 24-26
Sightseeing in Kyoto, using Hikari shinkansen from/to Nagoya. If you have JR pass, the shinkansen rides are free of charge.
Nov. 27
Further sightseeing in Kyoto or go to Tokyo. The end of the JR Pass.