Health care rules change from time to time as new scientific facts are discovered and as the natural environment changes. I just updated myself by doing a very quich search on several websites.
So far, the Japanese Ministry of Health, Labour and Welfare claims as of June, 2003, that in order to avoid mercury likely to be contained in seafood, those who are pregnant or assume to be pregnant should try to avoid eating swordfish, alfonsino, shark, certain whales and dolphins. Among them swordfish and alfonsino which are commonly served in Japanese restaurants should be eaten only up to 2 servings a week (60-80 grams per serving).
The Ministry claims however, that other than these, there is no data implying that other fish carry ill effects as far as mercury is concerned. The Ministry also claims that fish are generally good for the human's health and that this statement should not encourage any decrease on fish consumption. Sorry that I could only find links in Japanese language.
http://www.mhlw.go.jp/shingi/2003/06/s0603-3.htmlOther than this, a suppliment seller encourages pregnant women to consume fish, since the DHA contained is supposed to help build a healthy brain for the infant.
Kikkoman, a top selling soy sauce company, claims on their website that Vitamin B6 contained on foods like blue-skinned fish is supposed to reduce morning sickness.
On the other hand, quite often people are encouraged not to eat raw food in order to avoid food poisoning. Especially during summer, dangerous bacteria such as O-157 increases, and people requiring extra care such as elderlies, infants and the pregnant should avoid not only raw poultry and fish but also raw vegetables.
Although in your case, if food poisoning had occured, your wife would have suffered it long ago while she was in Japan.
Communicating on the web, I have the impression that specialists in the U.S. and perhaps other countries worry about the mercury and other chemicals contained in a lot of seafood, while in Japan, specialists believe that the postive effects you get from seafood, such as nutrition, outdo the ill effects.
Of course you have to keep in mind that economy will collapse if the government tells you to stop eating fish in Japan, but as someone else has mentioned, people in Japan have been eating fish all their lives and they are still alive and kicking.
But I do think it would be slightly different if a person who wasn't brought up in a fish-consuming environment suddenly starts eating a lot of fish. Also, the chemicals contained in the sea can be slightly different depending on the region.
In any case, most people in Japan believe that what counts is a _balanced_ meal. Eating bits of everything, and avoiding lots of one thing, is what makes a healthy body, especially for a pregnant person and her baby.
Take care!