For 2 full days.1. Kiyomizu Dera temple. Take Bus no. 206 at Kyoto Station, or take taxi. Try the Tofu, it's famous. Follow the cobble stone path (with shops on both sides) you walked and left turn on Forth Avenue. This is the Gion Area. One of the little alley way is where many Gisha house located. Continue on Forth Avenue and you will hit department stores, MacDonalds and subway station, going back to Kyoto Station etc.
2. Other option is go visit Miyazaki by train. Little bit far but worth it. Beautiful place, and not your typical tourist trap.
3. Sagano fun train ride. Very close by.