Am I rushing things and should I add or skip certain places? I rearrange your trips outside Tokyo.
: Shirakawa-go and Himeji are added.
: Hakone replaces Kawaguchiko.
You will go on a long-term journey, so make sure to check weather information diligently.
http://www.jma.go.jp/en/yoho/http://www.jma.go.jp/en/typh/If you choose a 14-day JRP and feel the 14-day part from Day 5 sounds hectic,
you might hope to get to Matsumoto by highway bus, start using the 14-day JRP on Day 6 and add one day for more flexiblity.
By Day 4 (Fri.) 09 Sep. within one or two days
: Asakusa -- Tobu-nikko on Tobu lines,
inside Nikko City, Tobu-nikko -- Asakusa,
each using Tobu All Nikko Pass.
http://www.japan-guide.com/e/e2358_002.html Day 5 (Sat.) 10 Sep.
: Tokyo --
Nagano -- Matsumoto.
Day 6 (Sun.) 11 Sep.
: Inside Matsumoto City,
Matsumoto --
Shinshimashima -- Kamikochi,
Kamikochi --
Hirayu Onsen --
Takayama,
each by bus (not covered by JRP).
http://www.japan-guide.com/e/e6040.htmlDay 7 (Mon.) 12 Sep.
:
Takayama -- Shirakawa-go, Shirakawa-go -- Kanazawa,
each by bus (not covered by JRP).
http://www.japan-guide.com/bus/shirakawago.htmlDay 8 (Tue.) 13 Sep.
: Inside Kanazawa City mainly on foot + by bus (not covered by JRP).
: Kanazawa -- Kyoto.
From Day 9 (Wed.) 14 Sep.
till Day 11 (Fri.) 16 Sep.
: Inside Kyoto City (maybe + adjecent areas)
mainly by bus (covered not by JRP but) mostly by one-day bus pass.
http://www2.city.kyoto.lg.jp/koho/eng/access/transport.html#cvcrdDay 12 (Sat.) 17 Sep.
:
Kyoto (departing early) -- Hiroshima.
: Inside Hiroshima City mainly by streetcar or bus (not covered by JRP).
: Hiroshima --
Miyajimaguchi by rail,
Miyajimaguchi -- Miyajima by JR-West Miyajima Ferry.
Day 13 (Sun.) 18 Sep.
: Inside Miyajima Island mainly on foot.
: Miyajima --
Miyajimaguchi by Ferry,
Miyajimaguchi --
Mihara -- Onomichi.
Day 14 (HOL.) 19 Sep.
: [Shimanami Kaido] Onomichi -- Imabari mainly by bicycle.
http://www.japan-guide.com/e/e3478.htmlDay 15 (Tue.) 20 Sep.
: Imabari --
Okayama -- Himeji.
: Himeji Castle.
: Himeji -- Sannomiya in Kobe.
Day 16 (Wed.) 21 Sep.
: Inside Kobe City
mainly by City Loop bus (covered not by JRP but) by one-day bus card.
: Sannomiya -- Osaka.
Day 17 (HOL.) 22 Sep
: Inside Osaka City mainly by subway (not covered by JRP).
Day 18 (Fri.) 23 Sep
: Osaka -- Nara.
: Inside Nara City
mainly by bus (covered not by JRP but) mostly by one-day bus pass.
http://www.narakotsu.co.jp/language/en/free-ticket/index.html: Nara --
Kyoto --
Shin-Osaka --
Odawara.
:
Odawara -- Hakone-Yumoto, using Hakone Freepass.
Day 19 (Sat.) 24 Sep.
: Inside Hakone Town, Hakone-Yumoto --
Odawara,
each using Hakone Freepass.
http://www.japan-guide.com/e/e2358_008.html:
Odawara -- Shinjuku on Odakyu lines (not covered by JRP).
http://www.japan-guide.com/e/e5206.htmlBy Day 25 (Fri.) 30 Sep.
: To Kamakura City and back, using Enoshima Kamakura Free Pass.
http://www.japan-guide.com/e/e3115.html