If you start late in each day, it could be rushed. The daytime is short in November. Even if you leave quite early, the Ibaraki part needs to be fixed. You allocate three full days in Kyoto and Arashiyama. Many use only two full days for those. So, I may vote for the Kiso Valley. There is a pedestrian only section in Magome. If you plan to come back to Kamikochi, consider doing Shirahone with Norikura in summer.
http://www.alpico.co.jp/access/kamikochi/2 ARRIVE TOKYO, ASAKUSA, SENSOJI TEMPLE
Jalan pages are in Japanese, but they show bar charts for the seasonality and more numbers to be looked.
1-2 hr Sensoji
http://www.jalan.net/kankou/spt_13106ag2130012302/3 DAY TRIP TO IBARAKI, FUKURODA FALL, KAIRAKUEN PARK, MT TSUKUBA
Daytime at Mito on Nov 3: 6:03-16:40
Asakusa 745-1247 Fukuroda 1300-1525 Kairakuen 1527-1811 Tsukubasan 540(+1)-817(+1) Asakusa (by timetables on 15 Aug): Impossible in a day! You would need to stay in Mito. If you arrive in Haneda early, what about this?
D1 Haneda 1100-1348 Tsukubasan 1700-1920 Mito
D2 Kairakuen - Mito 1102-1412 Fukuroda 1550-1952 Asakusa
1-2 hr Fukuroda
http://www.jalan.net/kankou/spt_08364ab2040005938/1-2 hr Kairakuen
http://www.jalan.net/kankou/spt_08201ah2140016450/3+ hr Tsukubasan
http://www.jalan.net/kankou/spt_08220ab2010003284/4 TSUKIJI, MEIJI SHRINE, SHINJUKU GARDEN, RIKUGIEN, KOISHIKAWA KORAKUEN
Daytime at Tokyo on Nov 4: 6:06-16:43
Asakusa 607-633 Tsukiji 634-706 Meiji Jingu 708-721 Gyoen 721-757 Rokugien 757-822 Koishikwa 823-849 Asakusa: Leaving eight hours for five places; it looks OK. You may do Asakusa after the sunset here. Note that the seasonal Jingu Gaien is different from Meiji Jingu.
1-2 hr Tsukiji Jogai
http://www.jalan.net/kankou/spt_13102aj2200116193/1-2 hr (Tsukiji Market)
http://www.jalan.net/kankou/spt_guide000000151723/1-2 hr Meiji Jingu
http://www.jalan.net/kankou/spt_13113ag2130014473/1-2 hr (Jingu Gaien)
http://www.jalan.net/kankou/spt_13104ah3330042204/1-3 hr Gyoen
http://www.jalan.net/kankou/spt_13104ah2140016473/1-2 hr Rikugien
http://www.jalan.net/kankou/spt_13105ah2140016676/1-2 hr Koishikawa
http://www.jalan.net/kankou/spt_13105ah2140016609/5 DAY TRIP TO KAMAKURA
6 MT FUJI, KAWAGUCHIKO, CHUREITO PAGODA
7 SAIKO, TRAVEL TO MATSUMOTO LATE AFTERNOON VIA KOFU AND SPEND NIGHT IN KOFU
8 SHOSENKYO GORGE IN KOFU AND SPEND NIGHT IN MATSUMOTO
Daytime at Kofu on Nov 6: 6:13-16:45
6 Asakusa 805-1058 Kawaguchiko
7 Kawaguchiko 1418-1650 Kofu
8 Kofu 909-1012 Shosenkyo 1325-1602 Matsumoto
Kawaguchiko area in one day plus and Shosenkyo in three hours: all would be rather ideal.
1-2 hr Kawaguchiko
http://www.jalan.net/kankou/spt_19427ab2030004495/3+ hr (area)
http://www.jalan.net/kankou/spt_19426cb3530080591/1-2 hr Niikurayama
http://www.jalan.net/kankou/spt_19202ah3330042646/-1 hr Saiko
http://www.jalan.net/kankou/spt_19428cb3530080963/1-3 hr Shosenkyo
http://www.jalan.net/kankou/spt_19201ab2040005906/1-2 hr (Koyo)
http://www.jalan.net/kankou/spt_19201ac2100147635/1-2 hr (Ropeway)
http://www.jalan.net/kankou/spt_19201ee4570112134/1-2 hr (Observatory)
http://www.jalan.net/kankou/spt_19201ad3350046121/9 MATSUMOTO CASTLE & JOYAMA PARK, SHIRAHONE ONSEN IN THE AFTERNOON
1-2 hr Matsumotojo
http://www.jalan.net/kankou/spt_20202af2120158570/? Joyama Koen
http://www.jalan.net/kankou/spt_20202ab2080158568/3+ hr (Alps Koen)
http://www.jalan.net/kankou/spt_20202ah3330158690/3+ hr Shirahone
http://www.jalan.net/kankou/spt_20202cd2111000218/http://www.alpico.co.jp/access/kamikochi/shirahone/10 SHIRAHONE ONSEN BACK MATSUMOTO VIA SHUTTLE BUS, MATSUMOTO TO TOYAMA VIA NAGANO, MONKEY PARK IF TIME ALLOWS, SPEND THE NIGHT IN TOYAMA
Shirahone 920-1122 Matsumoto 1149-1415 Yudanaka 1436-1451 Kambayashi -(35 min)- Jigokudani -(35 min)- Kambayashi 1651-1746 Nagano 1757-1923 Toyama: Possible, though somewhat rushed. The average spending time in Jokokudani is one hour and plus. The way from Kambayashi Onsen to Toyama should be in the dark. I prefer to stay in Shibu Onsen.
1-2 hr Jigokudani
http://www.jalan.net/kankou/spt_20561cc3310164979/3+ hr Shibu Onsen
http://www.jalan.net/kankou/spt_20561cd2110164954/http://www.nagadenbus.co.jp/local/diagram/diagram.php?route=NKN01http://jigokudani-yaenkoen.co.jp/accesshttp://www.nagadenbus.co.jp/common/document/siga_2017_summer.pdf11 KUROBE GORGE (EXPECT 11 NOV)
I would stay in Unazuki Onsen after Shibu.
3+ hr Kurobe
http://www.jalan.net/kankou/spt_guide000000118001/3+ hr Unazuki
http://www.jalan.net/kankou/spt_16341cd2110077981/12 TOYAMA TO NAGOYA VIA KANAZAWA, KENROKUEN IN KANAZAWA, HIMI COASTLINE IN THE MORNING
Daytime at Toyama on Nov 12: 6:25-16:45
Toyama 621-758 Nadaura Coast 830-1103 Kenrokuen 1324-1653 Nagoya: OK, but the sun will be in the direction of the Japan Alps in the morning.
-1 hr Amaharashi Kaigan
http://www.jalan.net/kankou/spt_16202ab2050006550/-1 hr Himi Kaigan
http://www.jalan.net/kankou/spt_16205ab2052035697/-1 hr Himi Nadaura Kaigan
http://www.jalan.net/kankou/spt_16205ab2052007473/1-2 hr Kenrokuen
http://www.jalan.net/kankou/spt_17201ah2140016713/13 DAY TRIP TO KORANKEI VALLEY, OBARA IF TIME ALLOWS
Daytime at Nagoya on Nov 13: 6:25-16:48
Nagoya 730-824 Umetsubo 839-944 Kaminigi 1219-1340 Sanage 1343-1423 Korankei 1641-1740 Josui 1742-1826: Rather easy. You would take more time in both places. Obara has working courses, while Korankei should have light-up events in the evening.
1-3 hr Shikizakura
http://www.jalan.net/kankou/spt_23523ac2100156644/ http://www.kankou-obara.toyota.aichi.jp/?cat=41-3 hr Korankei
http://www.jalan.net/kankou/spt_23541ab2040006220/1-3 hr (Momiji)
http://www.jalan.net/kankou/spt_23541ac2100131701/2 hr (Momiji Tunnel)
http://www.jalan.net/kankou/spt_23211ac2102042240/http://michinavitoyota.jp/portal/map.html?_tf=tnhttp://asuke.info/archives/001/201708/H29%E5%B9%B4%E5%BA%A6_%E5%90%8D%...14 DAY TRIP TO KISO VALLEY FROM NAGOYA, NAGOYA TO KYOTO AND STAY KYOTO
There are some variations to do in the Kiso Valley. Narai from the train station, a bus ride from Tsumago to Magome, and a walk on that route. It would take three hours on foot, but there is a luggage transfer by 500 yen. Narai is closer from Matsumoto. Nagiso is almost in the middle between Nagoya and Matsumoto. So, you may finish the Kiso Valley while you are in Matsumoto.
Nagoya 639-800 Nagiso - Tsumago - Magome 1404-1649 Kyoto
1-2 hr Magome
http://www.jalan.net/kankou/spt_guide000000184723/1-2 hr Tsumago
http://www.jalan.net/kankou/spt_20423ad2150163338/1-2 hr Narai
http://www.jalan.net/kankou/spt_guide000000152427/http://www.town.nagiso.nagano.jp/data/open/cnt/3/3851/1/bus-timetable....http://www.kiso-magome.com/map/mapimages/nakasendo-2010.pdfhttp://www.kiso-magome.com/migarunatabi.html15 KYOTO
16 ARASHIYAMA
17 HALF DAY NARA, HALF DAY UJI
18 KYOTO
19 KYOTO TO SHINGU, KUMANO KODO
There are several routes from Kyoto to Shingu; via Nagoya, Nara, or Wakayama. The fastest would be via Nagoya. But here I adopt the route via Wakayama. It includes one of the Kumano Kodo routes, Ohechi, the coastal one from Tanabe to Shingu. How much do you want to walk on the trails? If you want to do a round trip around Hongu, it would take a full day. So, do the Nachi area on this day, stay in Yunomine Onsen, and use the next day for Hongu. If you do not walk on such much, one and a half days for this area could be quite leisurely, compared with others.
Daytime at Wakayama on Nov 19: 6:36-16:53
Kyoto 636-1154 Shingu
http://www2.tb-kumano.jp/en/kumano-kodo/pdf/Kumano-Kodo-Nakahechi-Rout...3-4 hr Yunomine - Hosshin-Oji
http://www.hongu.jp/kumanokodo/walk/akagigoe/3.5 hr Hosshin-Oji - Hongu
http://www.hongu.jp/kumanokodo/walk/hosshin/2 hr Hongu - Yunomine
http://www.hongu.jp/kumanokodo/walk/dainichigoe/http://www2.tb-kumano.jp/en/kumano-kodo/pdf/Kumano-Kodo-Nakahechi-Rout...20 DAY TRIP TO NACHI FALL, HONGU
There are three Taisha shrines in this area; Hongu, Nachi, and Hayatama. Hongu is in the mountains, while Nachi near Katsuura and Hayatama near Shingu are closer to the sea. One of the most famous parts of the Kumano Kodo is Daimonzaka near Nachi. Daimonzaka has a dedicated bus stop. Also with the waterfall, Nachi-Katsuura would be the most popular site among the three. There is Bokido Spa in Hotel Urashima in Katsuura.
Bus timetables.
Katsuura - Nachi - Nachisan
http://www.kumakou.co.jp/bus/jikoku_item_9.htmlShingu - Nachi - Katsuura (JR could be better)
http://www.kumakou.co.jp/bus/jikoku_item_4.htmlShingu - Hongu
http://www.kumakou.co.jp/bus/jikoku_item_7.htmlShingu - Hongu - Yagi(in Nara; you may come to Shingu from Kyoto or Nara by this bus.)
http://www.narakotsu.co.jp/rosen/yagi-shingu/totsukawa-timetable.html1 hr Hongu Taisha
http://www.jalan.net/kankou/spt_30426ag2130013133/1 hr Nachi no Otaki
http://www.jalan.net/kankou/spt_guide000000172017/1-2 hr Nachi Taisha
http://www.jalan.net/kankou/spt_30421ag2130013132/1 hr Daimonzaka
http://www.jalan.net/kankou/spt_guide000000175133/3+ hr Bokido
http://www.jalan.net/kankou/spt_guide000000174431/-1 hr Hayatama Taisha
http://www.jalan.net/kankou/spt_30207ag2130010959/http://www.hongu.jp/kumanokodo/21 SHINGU TO ISE SHIMA, VISIT ISE GRAND SHRINE
Shingu 907-1232 Ise Jingu
1-2 hr Ise Jingu
http://www.jalan.net/kankou/spt_24203ag2130012374/22 TOBA, AMAHUT, ISE BACK TO OSAKA LATE AFTERNOON
Ise 653-729 Toba 1442-1657 Namba
It seems that there are at least two English speaking Ama huts in Toba. One has free shuttle bus from Toba, but there is a more frequent Kamome bus to the other. There are walking courses including Ishigami-san in Osatsu, Toba.
http://amakoya.com/english%20page.htmhttp://osatsu.org/en/http://www.city.toba.mie.jp/teikisen-kanri/teikisen/documents/english....http://osatsu.org/en/pdf/map.pdf-1 hr Ishigami-san
http://www.jalan.net/kankou/spt_24211ag2132067875/23 DAY TRIP TO KOYA SAN
3+ hr Koyasan
http://www.jalan.net/kankou/spt_30344ab2010002963/1-2 hr Okunoin
http://www.jalan.net/kankou/spt_guide000000172065/1 hr Kongobuji
http://www.jalan.net/kankou/spt_30344ag2130010978/There are connecting buses between Hongu and Koyasan. So, there are several routes to cover this area; such as Nagoya - Ise/Toba - Nachi/Shingu/Hongu - Koyasan - Nara - Kyoto - Osaka - KIX.
http://seichijunrei-bus.jp/index_us.html