The scheduled flight arrival time is 9:50pm on a Sat arriving at Terminal 3. On my first night I am staying at Via Inn Prime in Akasaka. That sounds
tight.
On the condition that you don't give up that hotel,
you had better
change your booking to stay there from Day 2,
or take a plane scheduled to get to HND [Haneda] or NRT [Narita] earlier on Day 1.
With everything going smoothly, you might make it.
However, as you see,
your flight arrival may be delayed,
and your immigration procedure may happen to be prolonged.
You are a first-timer, so you may need more time,
even though you find signs telling you directions,
here and there in the airport terminal and the railway stations.
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The simplest way to get to the hotel appears to be to take the Keikyū Airport Line to Shimbashi Station, and then the Ginza Line subway to Tameike-sannō Station. Your first train continues beyond Sengakuji (A07)
onto the Toei subway Asakusa Line.
- Tokyo Subway Route Map with station codes
(as of March 2023)
https://www.tokyometro.jp/lang_en/station/202303_number_en.pdfAt Shimbashi Station, you make a transfer
from the Toei subway Asakusa Line
to the Tokyo Metro Ginza Line,
where you go down the
stairs, carrying your luggage.
https://www.tokyometro.jp/station/yardmap_img/figure_yardmap_shimbashi...Haneda Airport Terminal 3
| [Keikyu Airport Line + Keikyu Main Line]
Sengakuji ((no transfer))
| [Toei Subway Asakusa Line]
Shimbashi (A10)
: Toei Track 2
| Transfer (outside the gates)
Shimbashi (G08)
: Tokyo Metro Track 1
| [Tokyo Metro Ginza Line]
Tameike-sanno (G06)
: Exit 11.
https://www.tokyometro.jp/station/yardmap_img/figure_yardmap_tameike-s...| Walking
Your hotel.
The last Keikyū train on Sat to make this trip according to Google Maps would leave Haneda T3 at 11:24pm. Yes, that's the last train to run beyond Sengakuji Station.
If for some reason I don't make it, I believe the only option would be to take a taxi to the hotel, which would be OK as a backup but is obviously a higher-cost option. Taxi fares are set higher during late and early hours
(from 10 p.m. to 5 a.m. in Tokyo).
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There is a route with transfers
at Mita and Shirokane-takanawa Stations,
where it seems you can go without
stairs.
(The last departure is earlier, though.)
Haneda Airport Terminal 3
| [Keikyu Airport Line + Keikyu Main Line]
Sengakuji ((no transfer))
| [Toei Subway Asakusa Line]
Mita (A08): Track 2
| Transfer (inside the Toei subway gates)
https://www.kotsu.metro.tokyo.jp/subway/stations/mita/i/solid.pngMita (I04): Track 3
| [Toei Subway Mita Line]
Shirokane-takanawa (I03): Track 4
| Transfer (inside the common subway gates)
https://www.tokyometro.jp/station/yardmap_img/figure_yardmap_shirokane...Shirokane-takanawa (N03): Track 2
| [Tokyo Metro Namboku Line]
Tameike-sanno (N06)
: Exit 7.
https://www.tokyometro.jp/station/yardmap_img/figure_yardmap_tameike-s...|
| Walking
Your hotel.
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